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Parameter files (in Amber's prepin/frcmod format) for non-standard lipids with PDB files*

POPC

prepin file for POPC


Corresponding PDB file for nomenclature of the atoms

POPS

prepin file for POPS


Corresponding PDB file for nomenclature of the atoms

PIP2

prepin file for PIP2


Corresponding PDB file for nomenclature of the atoms

DAG

prepin file for DAG

Additional frcmod file


Corresponding PDB file for nomenclature of the atoms

*Visit the amber tutorial to learn how to use these files.



PDB files for some lipid systems with different lipids

POPC+POPS at 300 K

PDB file with 58 POPC, 2 POPS molecules, 2 Na+ ions and 608 water molecules after 1 ns of simulation

POPC+POPS at 330 K

PDB file with 58 POPC, 2 POPS molecules, 2 Na+ ions and 608 water molecules after 1 ns of simulation

POPC+DAG at 300 K

PDB file with 90 POPC, 1 DAG and 1242 water molecules after 1 ns of simulation