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2008 |
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Solvent molecules bridge the mechanical unfolding transition state of a protein |
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[43] |
Dougan, Lorna and Feng, Gang and Lu, Hui and Fernandez, Julio M |
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Proceedings of the National Academy of Sciences (2008) v105, No 9, p3185-3190 |
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2007 |
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MeTaDoR: A comprehensive resource for membrane targeting domains and their host proteins |
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[42] |
Nitin Bhardwaj, Robert V. Stahelin, Guijun Zhao, Wonhwa Cho and Hui Lu |
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Bioinformatics. (2007) accepted |
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Prediction of Specific Protein-DNA Recognition by Knowledge-based Two-body and Three-body Interaction Potentials
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[40] |
Guijun Zhao , Matthew B Carson and Hui Lu |
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Proceedings of the 29th Annual International Conference of the IEEE EMBC, Lyon, France, 2007 |
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Finding new structural and sequence attributes to predict
disease-association of single amino acid polymorphisms (SAPs) |
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[39] |
Zhi-Qiang Ye, Shu-Qi Zhao, Ge Gao, Xiao-Qiao Liu, Robert E. Langlois, Hui Lu, and Liping Wei |
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Bioinformatics. 2007. v23, No 12, p1444-1450 |
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Learning to Translate Sequence and Structure to Function: Identifying DNA Binding and Membrane Binding Proteins |
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[38] |
Robert E Langlois, Matthew B Carson, Nitin Bhardwaj and Hui Lu |
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Annals of Biomedical Engineering. (2007) v25, No 6, p1043-1052. |
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Single-molecule force spectroscopy reveals a mechanically stable protein fold and the rational tuning of its mechanical stability |
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[37] |
Deepak Sharma, Ognjen Perisic, Qing Peng, Yi Cao, Canaan Lam, Hui Lu, and Hongbin Li |
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Proceedings of National Academy of Sciences, (2007) v104, no.22, p9278-9283. |
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Residue-Level Prediction of DNA-Binding Sites and its Application on DNA-Binding Protein Predictions |
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[36] |
Nitin Bhardwaj and Hui Lu |
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FEBS Letters 581(5), 1058-1066. |
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Contour Length and Refolding Rate of a Small Protein Controlled byEngineered Disulfide Bonds |
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[35] |
Sri Rama Koti Ainavarapu, Jasna Brujic, Hector H. Huang, Arun P. Wiita, Hui Lu, Lewyn Li, Kirstin A. Walther, Mariano Carrion-Vazquez, Hongbin Li, and Julio M. Fernandez |
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Biophysical Journal Volume 92, January 2007, 225-233 |
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Physical and Chemical
Basis for Structural Bioinformatics |
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[34] |
Hui Lu, Ognjen
Perisic and Dong Xu |
PDF |
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Book Chapter, “Computational
Methods for Protein Structure Prediction and Modeling” |
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edited by Ying Xu, Dong
Xu, and Jie Liang. Springer-Verlag. |
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2006 |
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Structural Bioinformatics Prediction
of Membrane-Binding Proteins |
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[33] |
Nitin Bhardwaj,Robert V Stahelin,Robert E Langlois,Wonhwa
Cho, and Hui Lu |
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Journal of Molecular Biology (2006) 359, 486-495. |
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2005 |
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Improved protein fold assignment using
support vector machines |
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[32] |
Robert E. Langlois, Alice Diec, Ognjen Perisic,
Yang Dai and Hui Lu |
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International Journal of Bioinformatics Research and Applications,
1(3):319, 2005 |
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Kernel-based machine learning protocol for recognizing DNA-binding proteins |
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[31] |
Nitin Bhardwaj, Robert E. Langlois, Guijun Zhao and Hui Lu |
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Nucleic Acid Research, 33(20):6486-6493 |
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Development of a Grid-based
Statistical Potential for Protein Structure Prediction |
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[30] |
Guijun Zhao and Hui
Lu |
PDF |
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Proceedings of the 2005 IEEE
Engineering in Medicine and Biology 27th Annual Conference, 2465 |
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Structure Based Prediction of Binding
Residues on DNA-binding Proteins |
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[29] |
Nitin Bhardwaj, Robert E. Langlois, Guijun Zhao
and Hui Lu |
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Proceedings of the 2005 IEEE Engineering in Medicine
and Biology 27th Annual Conference, 2347 |
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Correlation between
gene expression profiles and protein-protein interactions within/across
genomes |
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[28] |
Nitin Bhardwaj and Hui
Lu |
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Bioinformatics, 21:2730,
2005 |
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2004 |
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Chemistry on a single protein, vascular
cell adhesion molecule-1, during forced unfolding |
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[27] |
Nishant Bhasin, Philippe Carl, Sandy Harper,
Gang Feng, Hui Lu, David W. Speicher, Dennis
E. Discher |
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Journal of Biological Chemistry, 279:45865,
2004 |
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Kernel based approach for protein
fold prediction from sequence |
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[26] |
Robert Ezra Langlois, Alice
Diec, Yang Dai, Hui Lu |
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26th Annual International Conference
of the Engineering in Medicine and Biology Society, 2:2885, 2004 |
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2003 |
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The mechanical stability of ubiquitin
is linkage dependent |
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[25] |
Mariano Carrion-Vazquez, Hongbin Li, Hui
Lu, Andres Oberhauser, Piotr Marslazek, and Julio Fernandez |
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Nature Struct Biology, 10:738-743, 2003. |
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Statistical potential
guided protein structure refinement from ab initio prediction |
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[24] |
Hui Lu and Jeffery Skolnick |
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Biopolymers, 70:575-584,
2003. |
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Development of unified statistical potentials
describing protein-protein interactions |
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[23] |
Hui Lu, Long Lu, and Jeffery Skolnick |
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Biophysical Journal, 84:1895-1901, 2003 |
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Multimeric Threading
Based Prediction of Protein Interactions on a Genomic Scale: Application
to the Saccharomyces Cerevisiae Proteome. |
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[22] |
Long Lu, Andre Arakaki, Hui
Lu and Jeffery Skolnick |
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Genome Research, 13:1146-1154,
2003 |
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2002
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Unfolding of titin domains studied by
molecular dynamics simulations |
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[21] |
Mu Gao, Hui Lu, Klaus
Schulten |
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Journal of muscle research and cell motility,
23:513-521, 2002 |
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Reverse engineering
of the giant muscle protein titin |
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[20] |
Hongbin Li, Wolfgang Linke,
Andres Oberhauser, Mariano Carrion-Vazquez, Jason Kerkvliet,
Hui Lu, Piotr Marslazek, and Julio Fernandez |
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Nature, 418:998-1002, August
2002 |
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MULTIPROSPECTOR: An algorithm for the
prediction of protein-protein interaction by multimeric threading |
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[19] |
Long Lu, Hui Lu, and Jeffery
Skolnick |
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PROTEINS: Structure, Function, Genetics, 49:350-364,
2002 |
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Ab initio protein structure
prediction on a genomic scale: Application to the Mycoplasma Genitalium
Genome |
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[18] |
Daisuke Kihara, Yang Zhang,
Hui Lu, Andrzej Kolinski, and Jeffrey Skolnick |
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Proceedings of National Academy
of Sciences (USA), 99:5993-5998, April 2002 |
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2001
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Simulated refolding of stretched titin
immunoglobulin domain |
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[17] |
Mu Gao, Hui Lu, and Klaus Schulten |
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Biophysical Journal, 81:2268-2277, Oct 2001 |
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TOUCHSTONE: An ab initio
Protein Structure Prediction Method that Uses Threading-Based Tertiary
Restraints |
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[16] |
Daisuke Kihara, Hui
Lu, Andrzej Kolinski and Jeffery Skolnick |
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Proceedings of National Academy
of Sciences (USA), 98:10125-10130, Aug 2001 |
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A Distance-Dependent Atomic Knowledge-based
Potential for Improved Protein Structure Selection |
|
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[15] |
Hui Lu and Jeffery Skolnick |
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PROTEINS: Structure, Function, Genetics, 44:223-232,
August 15, 2001 |
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2000 |
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The key event in force-induced
unfolding of titin's immunoglobulin domains |
|
| |
[14] |
Hui Lu and Klaus Schulten |
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Biophysical Journal, 79(1):51-65,
July 2000 |
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Computer Modeling of Force-induced Titin
Domain Unfolding |
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[13] |
Hui Lu, Andre Krammer, Barry Isralewitz,
Viola Vogel, and Klaus Schulten |
PDF |
| |
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Adv Exp Med Biol. 481:143-60, 2000 |
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1999 |
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Mechanical Unfolding
Intermediates in Titin Modules |
|
| |
[12] |
Piotr Marszalek, Hui
Lu, Hongbin Li, Mariano Carrion-Vazquez, Andres Oberhauser,
Klaus Schulten, and Julio Fernandez |
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Nature, 402:100-103, 1999 |
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Steered Molecular Dynamics Simulation
of Conformational Changes of Immunoglobulin Domain I27 Interprete
Atomic Force Microscopy Observations |
|
| |
[11] |
Hui Lu and Klaus Schulten |
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Chemical Physics, 247(1):141-153, 1999 |
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Steered Molecular Dynamics
Simulations of Force-Induced protein Domain Unfolding |
|
| |
[10] |
Hui Lu and Klaus Schulten |
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PROTEINS: Structure, Function,
Genetics, 35:453-463, June 1999 |
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Forced Unfolding of the Fibronectin Type
III Module Reveals a Tensile Molecular Recognition Switch |
|
| |
[09] |
Andre Krammer, Hui Lu, Barry
Isralewitz, Klaus Schulten, and Viola Vogel |
|
| |
|
Proceedings of National Academy of Sciences (USA),
96:1351-1356, Feb 16, 1999 |
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Steered Molecular Dynamics |
|
| |
[08] |
Sergei Izrailev, Sergey Stepaniants,
Barry Isralewitz, Dorina Kosztin, Hui Lu, Ferenc Molnar,
Willy Wriggers, and Klaus Schulten |
PDF |
| |
|
Computational Molecular Dynamics:
Challenges, Methods, Ideas., Edited by P. Deuflhard et.
al., p36-63, Springer-Verlag, Berlin, Heidelberg, 1999 |
|
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| |
1998 |
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Three Electronic State Model of the Primary
Photoisomerization of Bacteriorhodopsin |
|
| |
[07] |
William Humphrey, Hui Lu, Ilya
Logunov, Hans Werner, and Klaus Schulten |
PDF |
| |
|
Biophysical Journal, 75(4):1689-1699, Oct
1998 |
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Unfolding of Titin
Immunoglobulin Domains by Steered Molecular Dynamics |
|
| |
[06] |
Hui Lu, Barry Isralewitz,
Andre Krammer, Viola Vogel, and Klaus Schulten |
|
| |
|
Biophysical Journal, 75(2):662-671,
Aug 1998 |
|
| |
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| |
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Quantum Dynamics of Retinal's Femtosecond
Photoisomerization in Bacteriorhodopsin |
|
| |
[05] |
M. Ben-Nun, Ferenc Molnar, Hui Lu,
James Phillips, Todd Martinez, and Klaus Schulten |
|
| |
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Faraday Discussion, 110:447-462, 1998 |
|
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1997
|
and
before |
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Probing Protein Motion
Through Temperature Echoes |
|
| |
[04] |
Klaus Schulten, Hui
Lu, and Linsen Bai |
PDF |
| |
|
Physics of Biological Systems,
Edited by H. Flyvbjerg et. al., Springer, 1997 |
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Geometrization of Electrodynamics in
a Finsler Space-time with Gauge Symmetry |
|
| |
[03] |
Hui Lu, Pey-Schuan Jian, and Jong-Ping
Hsu |
PDF |
| |
|
JingShin Physics Symposium in Memory of Professor
Wolfgang Kroll, Edited by J.P. Hsu et. al., World Scientific,
1997 |
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Transverse Conductivity
in Non-ideal Fiber Composite Geometries |
|
| |
[02] |
Ke-da Bao, Hui Lu,
and G. Grimvall |
PDF |
| |
|
International Journal of Heat
and Mass Transfer, 36(16):4033-4038, Nov 1993 |
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Effective Conductivity in a Checkerboard
Geometry at High Conductance Ratio and High Concentration |
|
| |
[01] |
Hui Lu and Ke-da Bao |
PDF |
| |
|
Physical Review B, 46(14):9209-9213, Oct 1992 |
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